Predict coding regions using Borodovsky's Markov method
Predict intron/exon boundaries using species-specific pattern files for splice sites
Align known genes, ESTs or proteins with your sequence
Predict where genes start using species-specific pattern files for start sites and transcription factor binding sites
Locate ORFs, stops and starts
Submit any selected feature, segment, or all of your sequence as a BLAST query*
Investigate related sequences using keywords with the integrated Entrez search tool*

Display restriction sites
Locate direct, dyad and inverted repeats
Generate codon usage summaries
Simulate agarose gel separations of restriction digests
Generate and graph base distribution summaries
Plot base frequency and base skew
Predict RNA folding
Plot localized DNA bending